LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
./chisurf/fluorescence/simulation/mt19937cok.cpp
./chisurf/fluorescence/simulation/simulation_.pyx
./chisurf/math/reaction/reaction_.pyx
./chisurf/structure/av/fps_.pyx
./chisurf/structure/av/mt19937cok.cpp
./chisurf/structure/potential/cPotentials_.pyx
chisurf/__init__.py
chisurf/__main__.py
chisurf/base.py
chisurf/common.py
chisurf/curve.py
chisurf/data.py
chisurf/decorators.py
chisurf/info.py
chisurf/parameter.py
chisurf/utils.py
chisurf.egg-info/PKG-INFO
chisurf.egg-info/SOURCES.txt
chisurf.egg-info/dependency_links.txt
chisurf.egg-info/entry_points.txt
chisurf.egg-info/requires.txt
chisurf.egg-info/top_level.txt
chisurf/cmd_tools/__init__.py
chisurf/cmd_tools/fcs_convert.py
chisurf/cmd_tools/make_ibh.py
chisurf/cmd_tools/mrc2bvox.py
chisurf/cmd_tools/protein_mc_fret.py
chisurf/cmd_tools/tttr_correlate.py
chisurf/cmd_tools/tttr_decay_histogram.py
chisurf/entry_points/__init__.py
chisurf/entry_points/cmd.txt
chisurf/entry_points/gui.txt
chisurf/experiments/__init__.py
chisurf/experiments/experiment.py
chisurf/experiments/fcs.py
chisurf/experiments/globalfit.py
chisurf/experiments/modelling.py
chisurf/experiments/pda.py
chisurf/experiments/reader.py
chisurf/experiments/tcspc.py
chisurf/fio/__init__.py
chisurf/fio/ascii.py
chisurf/fio/jordi.py
chisurf/fio/zipped.py
chisurf/fio/fluorescence/__init__.py
chisurf/fio/fluorescence/becker_hickl_set.py
chisurf/fio/fluorescence/bhfiles.py
chisurf/fio/fluorescence/burst.py
chisurf/fio/fluorescence/photons.py
chisurf/fio/fluorescence/pqres.py
chisurf/fio/fluorescence/sdtfile.py
chisurf/fio/fluorescence/tcspc.py
chisurf/fio/fluorescence/thdfile.py
chisurf/fio/fluorescence/tttr.py
chisurf/fio/fluorescence/fcs/__init__.py
chisurf/fio/fluorescence/fcs/asc_alv.py
chisurf/fio/fluorescence/fcs/china.py
chisurf/fio/fluorescence/fcs/confocor3.py
chisurf/fio/fluorescence/fcs/definitions.py
chisurf/fio/fluorescence/fcs/fcs_yaml.py
chisurf/fio/fluorescence/fcs/kristine.py
chisurf/fio/fluorescence/fcs/pq_dat.py
chisurf/fio/fluorescence/fcs/pycorrfit.py
chisurf/fio/fluorescence/fcs/util.py
chisurf/fio/structure/__init__.py
chisurf/fio/structure/coordinates.py
chisurf/fio/structure/density.py
chisurf/fitting/__init__.py
chisurf/fitting/fit.py
chisurf/fitting/parameter.py
chisurf/fitting/sample.py
chisurf/fitting/support_plane.py
chisurf/fluorescence/__init__.py
chisurf/fluorescence/general.py
chisurf/fluorescence/intensity.py
chisurf/fluorescence/anisotropy/__init__.py
chisurf/fluorescence/anisotropy/decay.py
chisurf/fluorescence/anisotropy/kappa2.py
chisurf/fluorescence/burst/__init__.py
chisurf/fluorescence/burst/bocpd.py
chisurf/fluorescence/burst/burst.py
chisurf/fluorescence/burst/bva.py
chisurf/fluorescence/burst/count_rate.py
chisurf/fluorescence/burst/kalman.py
chisurf/fluorescence/burst/utils.py
chisurf/fluorescence/fcs/__init__.py
chisurf/fluorescence/fcs/correlate.py
chisurf/fluorescence/fcs/filtered.py
chisurf/fluorescence/fret/__init__.py
chisurf/fluorescence/fret/acceptor.py
chisurf/fluorescence/fret/fret_line.py
chisurf/fluorescence/imaging/__init__.py
chisurf/fluorescence/pda/__init__.py
chisurf/fluorescence/simulation/__init__.py
chisurf/fluorescence/simulation/burpy.py
chisurf/fluorescence/simulation/dye_diffusion.py
chisurf/fluorescence/simulation/focus.py
chisurf/fluorescence/simulation/photon.py
chisurf/fluorescence/simulation/simulation_.cp310-win_amd64.pyd
chisurf/fluorescence/tcspc/__init__.py
chisurf/fluorescence/tcspc/convolve.py
chisurf/fluorescence/tcspc/corrections.py
chisurf/fluorescence/tcspc/phasor.py
chisurf/fluorescence/tcspc/tcspc.py
chisurf/gui/__init__.py
chisurf/gui/about.ui
chisurf/gui/decorators.py
chisurf/gui/exception_hook.py
chisurf/gui/gui.ui
chisurf/gui/main.py
chisurf/gui/simple_error_dialog.ui
chisurf/gui/resources/__init__.py
chisurf/gui/resources/resource.py
chisurf/gui/resources/fitting/anisotropy_lines.ui
chisurf/gui/resources/fitting/burst_view.ui
chisurf/gui/resources/fitting/calculate_enery_structures.ui
chisurf/gui/resources/fitting/chi2Hist.ui
chisurf/gui/resources/fitting/cluster_analysis.ui
chisurf/gui/resources/fitting/dye_diffusion_parameter.ui
chisurf/gui/resources/fitting/errorWidget_2.ui
chisurf/gui/resources/fitting/proteinMC.ui
chisurf/gui/resources/fitting/proteinMC2.ui
chisurf/gui/resources/fitting/structure_fit.ui
chisurf/gui/resources/icons/1462894045_chart02_64.png
chisurf/gui/resources/icons/48px-Media-playback-stop.svg.png
chisurf/gui/resources/icons/Anisotropy-Lines.png
chisurf/gui/resources/icons/BOINCManager.png
chisurf/gui/resources/icons/Cone.png
chisurf/gui/resources/icons/Document-print-preview.svg
chisurf/gui/resources/icons/Document-print.png
chisurf/gui/resources/icons/Document-print.svg
chisurf/gui/resources/icons/Document-save.png
chisurf/gui/resources/icons/Document-save.svg
chisurf/gui/resources/icons/Edit-delete-2.svg
chisurf/gui/resources/icons/Edit-delete.png
chisurf/gui/resources/icons/Edit-delete.svg
chisurf/gui/resources/icons/FCS-Filter.png
chisurf/gui/resources/icons/FCS.png
chisurf/gui/resources/icons/FRET-Lines.png
chisurf/gui/resources/icons/FRET.png
chisurf/gui/resources/icons/Farm-Fresh_control_play.png
chisurf/gui/resources/icons/Farm-Fresh_control_record.png
chisurf/gui/resources/icons/Farm-Fresh_control_stop.png
chisurf/gui/resources/icons/Gtk-media-stop.svg
chisurf/gui/resources/icons/Media-playback-start.svg
chisurf/gui/resources/icons/Media-record.svg
chisurf/gui/resources/icons/Peptide_FRET.png
chisurf/gui/resources/icons/System-log-out.png
chisurf/gui/resources/icons/System-log-out.svg
chisurf/gui/resources/icons/TCSPC.png
chisurf/gui/resources/icons/Untitled.png
chisurf/gui/resources/icons/__init__.py
chisurf/gui/resources/icons/accessories-calculator.png
chisurf/gui/resources/icons/accessories-calculator.svg
chisurf/gui/resources/icons/add-xxl.png
chisurf/gui/resources/icons/available-updates-xxl.png
chisurf/gui/resources/icons/checkbox.png
chisurf/gui/resources/icons/cs_icon.svg
chisurf/gui/resources/icons/cs_logo.png
chisurf/gui/resources/icons/document-new.svg
chisurf/gui/resources/icons/document-open.png
chisurf/gui/resources/icons/document-open.svg
chisurf/gui/resources/icons/down_arrow.png
chisurf/gui/resources/icons/dye-diffusion.png
chisurf/gui/resources/icons/edit-clear.svg
chisurf/gui/resources/icons/et.png
chisurf/gui/resources/icons/filter.png
chisurf/gui/resources/icons/fitting.svg
chisurf/gui/resources/icons/fortune.png
chisurf/gui/resources/icons/handle.png
chisurf/gui/resources/icons/hdf2pdb.png
chisurf/gui/resources/icons/help-browser.png
chisurf/gui/resources/icons/help-browser.svg
chisurf/gui/resources/icons/help-xxl.png
chisurf/gui/resources/icons/kitesurf.png
chisurf/gui/resources/icons/kitesurf.svg
chisurf/gui/resources/icons/list-add.png
chisurf/gui/resources/icons/list-add.svg
chisurf/gui/resources/icons/open-in-browser-xxl.png
chisurf/gui/resources/icons/pdb2label.png
chisurf/gui/resources/icons/play-xxl.png
chisurf/gui/resources/icons/player-stop-outline-512.png
chisurf/gui/resources/icons/potential.png
chisurf/gui/resources/icons/power-xxl.png
chisurf/gui/resources/icons/preferences-system.svg
chisurf/gui/resources/icons/printer-3-xxl.png
chisurf/gui/resources/icons/record-xxl.png
chisurf/gui/resources/icons/save-xxl.png
chisurf/gui/resources/icons/splashscreen.png
chisurf/gui/resources/icons/splashscreen.svg
chisurf/gui/resources/icons/stop-xxl.png
chisurf/gui/resources/icons/structure2transfer.png
chisurf/gui/resources/icons/system_software_update.png
chisurf/gui/resources/icons/tttr.png
chisurf/gui/resources/icons/window-layout-xxl.png
chisurf/gui/resources/icons/window-multi-xxl.png
chisurf/gui/resources/icons/window-new.png
chisurf/gui/resources/icons/window-stack.png
chisurf/gui/resources/icons/window-tile.png
chisurf/gui/resources/icons/x-mark-4-xxl.png
chisurf/gui/styles/__init__.py
chisurf/gui/styles/dark.qss
chisurf/gui/styles/light.qss
chisurf/gui/tools/__init__.py
chisurf/gui/tools/code_editor/__init__.py
chisurf/gui/tools/code_editor/text_editor.py
chisurf/gui/tools/f_test/F-Calculator.ui
chisurf/gui/tools/f_test/__init__.py
chisurf/gui/tools/f_test/__main__.py
chisurf/gui/tools/f_test/f_calculator.py
chisurf/gui/tools/parameter_editor/__init__.py
chisurf/gui/tools/parameter_editor/__main__.py
chisurf/gui/tools/parameter_editor/constants.json
chisurf/gui/tools/parameter_editor/parameter_editor.py
chisurf/gui/tools/parameter_editor/sample.json
chisurf/gui/tools/structure/__init__.py
chisurf/gui/tools/structure/align_trajectory/__init__.py
chisurf/gui/tools/structure/align_trajectory/__main__.py
chisurf/gui/tools/structure/align_trajectory/align_trajectory.ui
chisurf/gui/tools/structure/convert_trajectory/__init__.py
chisurf/gui/tools/structure/convert_trajectory/__main__.py
chisurf/gui/tools/structure/convert_trajectory/convert_structures.ui
chisurf/gui/tools/structure/create_av_json/__init__.py
chisurf/gui/tools/structure/create_av_json/__main__.py
chisurf/gui/tools/structure/create_av_json/fps_json_edit.ui
chisurf/gui/tools/structure/create_av_json/label_structure.py
chisurf/gui/tools/structure/fret_trajectory/__init__.py
chisurf/gui/tools/structure/fret_trajectory/__main__.py
chisurf/gui/tools/structure/fret_trajectory/gui.py
chisurf/gui/tools/structure/fret_trajectory/structure2transfer.ui
chisurf/gui/tools/structure/fret_trajectory/traj2fret.py
chisurf/gui/tools/structure/join_trajectories/__init__.py
chisurf/gui/tools/structure/join_trajectories/__main__.py
chisurf/gui/tools/structure/join_trajectories/join_traj.ui
chisurf/gui/tools/structure/potential_energy/__init__.py
chisurf/gui/tools/structure/potential_energy/__main__.py
chisurf/gui/tools/structure/potential_energy/calculate_potential.ui
chisurf/gui/tools/structure/potential_energy/potential_energy.py
chisurf/gui/tools/structure/remove_clashed_frames/__init__.py
chisurf/gui/tools/structure/remove_clashed_frames/__main__.py
chisurf/gui/tools/structure/remove_clashed_frames/remove_clashes.ui
chisurf/gui/tools/structure/rotate_translate_trajectory/__init__.py
chisurf/gui/tools/structure/rotate_translate_trajectory/__main__.py
chisurf/gui/tools/structure/rotate_translate_trajectory/rotate_translate_traj.ui
chisurf/gui/tools/structure/save_topology/__init__.py
chisurf/gui/tools/structure/save_topology/__main__.py
chisurf/gui/tools/structure/save_topology/save_topology.ui
chisurf/gui/tools/tttr/__init__.py
chisurf/gui/tools/tttr/convert/__init__.py
chisurf/gui/tools/tttr/convert/__main__.py
chisurf/gui/tools/tttr/convert/convert.py
chisurf/gui/tools/tttr/convert/tttr_convert.ui
chisurf/gui/tools/tttr/correlate/__init__.py
chisurf/gui/tools/tttr/correlate/__main__.py
chisurf/gui/tools/tttr/correlate/correlate.py
chisurf/gui/tools/tttr/correlate/correlatorWidget.ui
chisurf/gui/tools/tttr/correlate/cr_filter.ui
chisurf/gui/tools/tttr/correlate/tttr_correlate.ui
chisurf/gui/tools/tttr/histogram/__init__.py
chisurf/gui/tools/tttr/histogram/__main__.py
chisurf/gui/tools/tttr/histogram/decay_histogram.py
chisurf/gui/tools/tttr/histogram/tcspcTTTRWidget.ui
chisurf/gui/tools/tttr/histogram/tttr_histogram.ui
chisurf/gui/widgets/__init__.py
chisurf/gui/widgets/general.py
chisurf/gui/widgets/ipython.py
chisurf/gui/widgets/progress.py
chisurf/gui/widgets/settings_editor.py
chisurf/gui/widgets/experiments/__init__.py
chisurf/gui/widgets/experiments/widgets.py
chisurf/gui/widgets/experiments/modelling/__init__.py
chisurf/gui/widgets/experiments/modelling/modelling.py
chisurf/gui/widgets/experiments/modelling/proteinMCLoad.ui
chisurf/gui/widgets/experiments/pda/__init__.py
chisurf/gui/widgets/experiments/pda/controller.py
chisurf/gui/widgets/experiments/pda/pda_tttr.ui
chisurf/gui/widgets/experiments/tcspc/__init__.py
chisurf/gui/widgets/experiments/tcspc/bh_sdt.py
chisurf/gui/widgets/experiments/tcspc/controller.py
chisurf/gui/widgets/experiments/tcspc/tcspc_csv.ui
chisurf/gui/widgets/experiments/tcspc/tcspc_sdt.ui
chisurf/gui/widgets/experiments/tcspc/tcspc_simulator.ui
chisurf/gui/widgets/experiments/tcspc/tcspc_tttr.ui
chisurf/gui/widgets/fio/__init__.py
chisurf/gui/widgets/fio/csvInput.ui
chisurf/gui/widgets/fio/fio.py
chisurf/gui/widgets/fio/spcSampleSelectWidget.ui
chisurf/gui/widgets/fitting/__init__.py
chisurf/gui/widgets/fitting/fittingWidget.ui
chisurf/gui/widgets/fitting/variable_widget.ui
chisurf/gui/widgets/fitting/widgets.py
chisurf/gui/widgets/fluorescence/__init__.py
chisurf/gui/widgets/fluorescence/phasor_widget.ui
chisurf/gui/widgets/fluorescence/tcspc.py
chisurf/gui/widgets/fluorescence/av/__init__.py
chisurf/gui/widgets/fluorescence/av/accessible_volume.py
chisurf/gui/widgets/fluorescence/av/av_property.ui
chisurf/gui/widgets/fortune/__init__.py
chisurf/gui/widgets/pdb/__init__.py
chisurf/gui/widgets/pdb/pdb.py
chisurf/gui/widgets/pdb/pdb_widget.ui
chisurf/gui/widgets/pdb/proteinFolderLoad.ui
chisurf/gui/widgets/structure/MJ-resource.ui
chisurf/gui/widgets/structure/Potential-CaLJ.ui
chisurf/gui/widgets/structure/Potential_Asa.ui
chisurf/gui/widgets/structure/Potential_Hbond_2.ui
chisurf/gui/widgets/structure/__init__.py
chisurf/gui/widgets/structure/avWidget.ui
chisurf/gui/widgets/structure/potential-clash.ui
chisurf/gui/widgets/structure/potentials.py
chisurf/gui/widgets/structure/unres-cb-resource.ui
chisurf/gui/widgets/ucfret/__init__.py
chisurf/gui/widgets/ucfret/ucfret_wizard.ui
chisurf/gui/widgets/ucfret/wizard.py
chisurf/gui/widgets/wizard/__init__.py
chisurf/gui/widgets/wizard/detector_wizard_page.ui
chisurf/gui/widgets/wizard/fcs_merger.py
chisurf/gui/widgets/wizard/fcs_merger.ui
chisurf/gui/widgets/wizard/tttr_burst_finder.py
chisurf/gui/widgets/wizard/tttr_burst_finder.ui
chisurf/gui/widgets/wizard/tttr_channel_definition.py
chisurf/gui/widgets/wizard/tttr_correlator.py
chisurf/gui/widgets/wizard/tttr_correlator.ui
chisurf/gui/widgets/wizard/tttr_file_format.py
chisurf/gui/widgets/wizard/tttr_file_format.ui
chisurf/gui/widgets/wizard/tttr_photon_filter.py
chisurf/gui/widgets/wizard/tttr_photon_filter.ui
chisurf/macros/__init__.py
chisurf/macros/core_data.py
chisurf/macros/core_fit.py
chisurf/macros/model.py
chisurf/macros/model_parse.py
chisurf/math/__init__.py
chisurf/math/datatools.py
chisurf/math/signal.py
chisurf/math/statistics.py
chisurf/math/functions/__init__.py
chisurf/math/functions/distributions.py
chisurf/math/functions/rdf.py
chisurf/math/functions/special.py
chisurf/math/linalg/__init__.py
chisurf/math/optimization/__init__.py
chisurf/math/optimization/leastsqbound.py
chisurf/math/optimization/mem.py
chisurf/math/optimization/nnls.py
chisurf/math/rand/__init__.py
chisurf/math/reaction/__init__.py
chisurf/math/reaction/continuous.py
chisurf/math/reaction/reaction_.cp310-win_amd64.pyd
chisurf/math/reaction/stochastic.py
chisurf/models/__init__.py
chisurf/models/model.py
chisurf/models/fcs/__init__.py
chisurf/models/fcs/fcs.py
chisurf/models/fcs/models.yaml
chisurf/models/global_model/__init__.py
chisurf/models/global_model/agentfit.py
chisurf/models/global_model/agentfit_widget.py
chisurf/models/global_model/globalfit.py
chisurf/models/global_model/globalfit.ui
chisurf/models/global_model/models.yaml
chisurf/models/global_model/parse.py
chisurf/models/global_model/widget.py
chisurf/models/parameter_transform/__init__.py
chisurf/models/parameter_transform/model.py
chisurf/models/parameter_transform/models.yaml
chisurf/models/parameter_transform/parameter_transform.ui
chisurf/models/parameter_transform/widget.py
chisurf/models/parse/__init__.py
chisurf/models/parse/models.yaml
chisurf/models/parse/parse.py
chisurf/models/parse/parseWidget.ui
chisurf/models/parse/widget.py
chisurf/models/parse/tcspc/__init__.py
chisurf/models/parse/tcspc/tcspc_model.yaml
chisurf/models/parse/tcspc/tcspc_parse.py
chisurf/models/pda/__init__.py
chisurf/models/pda/nusiance.py
chisurf/models/pda/simple.py
chisurf/models/pda/widgets.py
chisurf/models/stopped_flow/__init__.py
chisurf/models/stopped_flow/reaction.ui
chisurf/models/stopped_flow/stopped_flow.py
chisurf/models/tcspc/__init__.py
chisurf/models/tcspc/anisotropy.py
chisurf/models/tcspc/av_decay.py
chisurf/models/tcspc/fret.py
chisurf/models/tcspc/lifetime.py
chisurf/models/tcspc/load_distance_distibution.ui
chisurf/models/tcspc/mix_model.py
chisurf/models/tcspc/nusiance.py
chisurf/models/tcspc/pddem.py
chisurf/models/tcspc/tcspc.models.json
chisurf/models/tcspc/dye_diffusion/__init__.py
chisurf/models/tcspc/dye_diffusion/dye_diffusion.json
chisurf/models/tcspc/dye_diffusion/dye_diffusion.py
chisurf/models/tcspc/dye_diffusion/dye_diffusion3.ui
chisurf/models/tcspc/parse/__init__.py
chisurf/models/tcspc/parse/tcspc_model.yaml
chisurf/models/tcspc/parse/tcspc_parse.py
chisurf/models/tcspc/widgets/__init__.py
chisurf/models/tcspc/widgets/anisotropy.py
chisurf/models/tcspc/widgets/convolve.py
chisurf/models/tcspc/widgets/corrections.py
chisurf/models/tcspc/widgets/discrete_distance.py
chisurf/models/tcspc/widgets/et.py
chisurf/models/tcspc/widgets/et_model_free.ui
chisurf/models/tcspc/widgets/fret_rate.py
chisurf/models/tcspc/widgets/gaussian.py
chisurf/models/tcspc/widgets/generic.py
chisurf/models/tcspc/widgets/lifetime.py
chisurf/models/tcspc/widgets/lifetime_mix.py
chisurf/models/tcspc/widgets/parse_decay.py
chisurf/models/tcspc/widgets/pddem.py
chisurf/models/tcspc/widgets/pddem.ui
chisurf/models/tcspc/widgets/tcspcCorrections.ui
chisurf/models/tcspc/widgets/tcspc_convolve.ui
chisurf/models/tcspc/widgets/worm_like_chain.py
chisurf/notebooks/FLIM_01_IntensityImages.ipynb
chisurf/notebooks/FLIM_02_MeanArrivalTime.ipynb
chisurf/notebooks/FLIM_03_ImageSegmentation.ipynb
chisurf/notebooks/FLIM_04_Decays_from_ROIs.ipynb
chisurf/notebooks/FLIM_05_PixelwiseInformation_2D.ipynb
chisurf/notebooks/TTTR-Correlation.ipynb
chisurf/notebooks/TTTR-Split.ipynb
chisurf/notebooks/__init__.py
chisurf/notebooks/smFRET_01_Burst-Search_MFD.ipynb
chisurf/notebooks/smFRET_01_Burst_Search_ALEX.ipynb
chisurf/notebooks/smFRET_02_Burst-MLE-Lifetime-Analysis.ipynb
chisurf/notebooks/smFRET_03_BVA-FRET.ipynb
chisurf/notebooks/smFRET_04_HistogramFromBurst.ipynb
chisurf/notebooks/old/FRET-BVA_int.ipynb
chisurf/plots/__init__.py
chisurf/plots/agent_fit.py
chisurf/plots/av_plot.py
chisurf/plots/distribution.py
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